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Among tremendous biodiversity within the California Current Ecosystem (CCE) are gigantic mysticetes (baleen whales) that produce structured sequences of sound described as song. From six years of passive acoustic monitoring within the central CCE we measured seasonal and interannual variations in the occurrence of blue (Balaenoptera musculus), fin (Balaenoptera physalus), and humpback (Megaptera novaeangliae) whale song. Song detection during 11 months of the year defines its prevalence in this foraging habitat and its potential use in behavioral ecology research. Large interannual changes in song occurrence within and between species motivates examination of causality. Humpback whales uniquely exhibited continuous interannual increases, rising from 34% to 76% of days over six years, and we examine multiple hypotheses to explain this exceptional trend. Potential influences of physical factors on detectability – including masking and acoustic propagation – were not supported by analysis of wind data or modeling of acoustic transmission loss. Potential influences of changes in local population abundance, site fidelity, or migration timing were supported for two of the interannual increases in song detection, based on extensive local photo ID data (17,356 IDs of 2,407 individuals). Potential influences of changes in foraging ecology and efficiency were supported across all years by analyses of the abundance and composition of forage species. Following detrimental food web impacts of a major marine heatwave that peaked during the first year of the study, foraging conditions consistently improved for humpback whales in the context of their exceptional prey-switching capacity. Stable isotope data from humpback and blue whale biopsy samples are consistent with observed interannual variations in the regional abundance and composition of forage species. This study thus indicates that major interannual changes in detection of baleen whale song may reflect underlying variations in forage species availability driven by energetic variations in ecosystem state. 

Abstract Bio-logging devices equipped with inertial measurement units—particularly accelerometers, magnetometers, and pressure sensors—have revolutionized our ability to study animals as necessary electronics have gotten smaller and more affordable over the last two decades. These animal-attached tags allow for fine scale determination of behavior in the absence of direct observation, particularly useful in the marine realm, where direct observation is often impossible, and recent devices can integrate more power hungry and sensitive instruments, such as hydrophones, cameras, and physiological sensors. To convert the raw voltages recorded by bio-logging sensors into biologically meaningful metrics of orientation (e.g., pitch, roll and heading), motion (e.g., speed, specific acceleration) and position (e.g., depth and spatial coordinates), we developed a series of MATLAB tools and online instructional tutorials. Our tools are adaptable for a variety of devices, though we focus specifically on the integration of video, audio, 3-axis accelerometers, 3-axis magnetometers, 3-axis gyroscopes, pressure, temperature, light and GPS data that are the standard outputs from Customized Animal Tracking Solutions (CATS) video tags. Our tools were developed and tested on cetacean data but are designed to be modular and adaptable for a variety of marine and terrestrial species. In this text, we describe how to use these tools, the theories and ideas behind their development, and ideas and additional tools for applying the outputs of the process to biological research. We additionally explore and address common errors that can occur during processing and discuss future applications. All code is provided open source and is designed to be useful to both novice and experienced programmers.